Variant report

Variant	rs10259235
Chromosome Location	chr7:101365626-101365627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1965519	0.81[ASN][1000 genomes]
rs2246401	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2462336	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2529239	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2529240	0.82[ASN][1000 genomes]
rs2529241	0.82[ASN][1000 genomes]
rs2690887	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2690888	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690952	0.98[ASN][1000 genomes]
rs9649235	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101360600-101366600	Enhancers	Fetal Intestine Large	intestine
3	chr7:101363800-101365800	Weak transcription	Fetal Intestine Small	intestine
4	chr7:101364200-101369000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:101364800-101382400	Weak transcription	Thymus	Thymus
6	chr7:101365200-101366000	Bivalent Enhancer	Fetal Stomach	stomach
7	chr7:101365200-101366400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:101365400-101365800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:101365400-101365800	Enhancers	Fetal Brain Male	brain
10	chr7:101365400-101365800	Active TSS	Rectal Smooth Muscle	rectum
11	chr7:101365400-101366000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:101365400-101366000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:101365400-101366000	Enhancers	Colonic Mucosa	Colon
14	chr7:101365400-101366000	Enhancers	Lung	lung
15	chr7:101365400-101366000	Enhancers	Ovary	ovary
16	chr7:101365400-101366200	Enhancers	Placenta	Placenta
17	chr7:101365400-101366400	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr7:101365600-101365800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr7:101365600-101371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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