Variant report

Variant	rs10259541
Chromosome Location	chr7:56849564-56849565
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427783	chr7:56334626-56983646	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1022563	chr7:56383876-57318888	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1020833	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
4	nsv538865	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
5	nsv1017561	chr7:56512618-57334136	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1027775	chr7:56782295-56954387	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv471639	chr7:56782304-56965485	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv1020183	chr7:56785833-56976080	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv1017473	chr7:56786388-56954387	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv1021053	chr7:56786388-56976080	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv1033128	chr7:56787535-57493216	ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
12	nsv1033591	chr7:56795476-56976080	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv1017155	chr7:56795476-57084120	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
14	esv2761073	chr7:56795488-57116749	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
15	nsv1027491	chr7:56807732-56954387	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
16	nsv1032918	chr7:56807732-56976080	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	nsv1026656	chr7:56807732-57007829	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	nsv1019894	chr7:56807732-57068728	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1021343	chr7:56807732-57084120	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
20	nsv1016071	chr7:56807732-57116749	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
21	nsv1021536	chr7:56808099-56976080	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv1016541	chr7:56823372-57806010	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
23	nsv1019506	chr7:56833052-56976080	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56849200-56849600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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