Variant report

Variant	rs1026066
Chromosome Location	chr2:30833963-30833964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30833195..30835314-chr2:30840364..30842718,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10153933	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10180872	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10189926	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10195537	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10199517	1.00[YRI][hapmap]
rs10201957	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10203381	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10207070	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs10207451	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10208152	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11127283	0.84[EUR][1000 genomes]
rs12185696	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13429099	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13430761	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1357849	1.00[YRI][hapmap]
rs17323641	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17394450	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs1869427	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1869431	1.00[YRI][hapmap]
rs1880540	1.00[YRI][hapmap]
rs2885931	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62139626	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62139651	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62142162	0.84[AFR][1000 genomes]
rs6713112	1.00[JPT][hapmap]
rs722019	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9808079	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv1826356	chr2:30809843-30841108	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1003432	chr2:30814986-30849343	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762445	chr2:30814998-30849343	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30758600-30853800	Weak transcription	Thymus	Thymus
2	chr2:30792600-30863000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:30792800-30851400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:30798400-30839600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:30808200-30844600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:30811400-30834400	Weak transcription	Psoas Muscle	Psoas
7	chr2:30811600-30863000	Weak transcription	Ovary	ovary
8	chr2:30813000-30834200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:30815000-30834400	Weak transcription	Fetal Lung	lung
10	chr2:30818800-30835000	Weak transcription	Primary B cells from cord blood	blood
11	chr2:30823000-30835400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:30823400-30834000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:30823600-30834200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:30823600-30834400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr2:30824000-30835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:30825800-30844200	Weak transcription	Fetal Thymus	thymus
17	chr2:30826400-30835600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:30828000-30834200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:30828000-30834200	Weak transcription	Left Ventricle	heart
20	chr2:30828200-30834200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:30828200-30834800	Weak transcription	HepG2	liver
22	chr2:30828400-30836200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr2:30828600-30834800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:30828800-30834400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:30828800-30834600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:30828800-30835800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:30828800-30837600	Weak transcription	Primary T cells from cord blood	blood
28	chr2:30829000-30834200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr2:30829000-30834400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr2:30829000-30834400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr2:30830200-30834200	Weak transcription	HSMM	muscle
32	chr2:30831000-30844800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr2:30831600-30844800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr2:30831600-30852800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr2:30831800-30863000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:30832000-30835600	Weak transcription	A549	lung
37	chr2:30832000-30848600	Weak transcription	K562	blood
38	chr2:30832800-30834200	Enhancers	Fetal Heart	heart
39	chr2:30832800-30844200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr2:30833800-30834400	Weak transcription	Aorta	Aorta
41	chr2:30833800-30836600	Enhancers	HUES64 Cell Line	embryonic stem cell

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