Variant report

Variant	rs10261176
Chromosome Location	chr7:127980750-127980751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127224772..127227118-chr7:127979965..127981666,2	K562	blood:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10236380	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11976673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750036	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3763395	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3763398	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58238563	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6954653	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6964936	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7794771	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7809696	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv608400	chr7:127978820-128048194	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127939600-127982200	Weak transcription	Stomach Mucosa	stomach
2	chr7:127940000-127980800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr7:127943000-127981200	Strong transcription	Dnd41	blood
4	chr7:127943000-127982000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:127943200-127981600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:127943400-127981400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr7:127943400-127981600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:127953800-127982600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:127955800-127982800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:127963400-127981200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:127964600-127981000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:127964600-127981200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:127970200-127981400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:127970600-127981400	Strong transcription	Primary T cells from cord blood	blood
15	chr7:127972400-127982000	Weak transcription	Right Atrium	heart
16	chr7:127974200-127982200	Weak transcription	Fetal Heart	heart
17	chr7:127974400-127982200	Weak transcription	NHLF	lung
18	chr7:127976000-127982800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:127976600-127982400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:127977000-127982400	Weak transcription	Colonic Mucosa	Colon
21	chr7:127977200-127981200	Strong transcription	NHEK	skin
22	chr7:127977200-127982000	Weak transcription	Fetal Kidney	kidney
23	chr7:127977200-127982800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:127977400-127981400	Weak transcription	Aorta	Aorta
25	chr7:127977400-127982000	Weak transcription	Fetal Brain Male	brain
26	chr7:127977400-127982000	Weak transcription	Gastric	stomach
27	chr7:127977400-127982000	Weak transcription	Ovary	ovary
28	chr7:127977400-127982200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:127977400-127982400	Weak transcription	Esophagus	oesophagus
30	chr7:127977400-127982400	Weak transcription	Spleen	Spleen
31	chr7:127977600-127983200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:127977800-127981400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr7:127978000-127982400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:127978400-127982000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:127978600-127981400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:127978600-127981600	Weak transcription	Fetal Stomach	stomach
37	chr7:127978600-127982000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:127978600-127982000	Weak transcription	Fetal Intestine Small	intestine
39	chr7:127978600-127982000	Weak transcription	Lung	lung
40	chr7:127978600-127982000	Weak transcription	Pancreas	Pancrea
41	chr7:127978600-127982400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr7:127978800-127981200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:127978800-127981400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr7:127978800-127981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:127978800-127982200	Weak transcription	Brain Substantia Nigra	brain
46	chr7:127978800-127982400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:127978800-127982600	Weak transcription	NH-A	brain
48	chr7:127979000-127981800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:127979000-127982400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr7:127979200-127981200	Weak transcription	Brain Angular Gyrus	brain

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