Variant report
| Variant | rs10261357 |
|---|---|
| Chromosome Location | chr7:65523081-65523082 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr7:65523062-65523373 | Hela-S3 | cervix: | n/a | chr7:65523201-65523212 |
| 2 | CEBPB | chr7:65523039-65523344 | K562 | blood: | n/a | chr7:65523201-65523212 |
| 3 | CEBPB | chr7:65523043-65523338 | IMR90 | lung: | n/a | chr7:65523201-65523212 |
| 4 | CEBPB | chr7:65523071-65523368 | A549 | lung: | n/a | chr7:65523201-65523212 |
| 5 | CEBPB | chr7:65523047-65523353 | HepG2 | liver: | n/a | chr7:65523201-65523212 |
| 6 | CEBPB | chr7:65523040-65523389 | K562 | blood: | n/a | chr7:65523201-65523212 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252997 | TF binding region |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs10233953 | 1.00[AFR][1000 genomes] |
| rs10235498 | 1.00[AFR][1000 genomes] |
| rs10246998 | 1.00[AFR][1000 genomes] |
| rs10274777 | 1.00[AFR][1000 genomes] |
| rs28772730 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761079 | chr7:65092426-65689733 | Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv532124 | chr7:65371521-66234730 | Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 125 gene(s) | inside rSNPs | diseases |
| 3 | nsv888325 | chr7:65474919-65575893 | Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv1021186 | chr7:65492601-65663438 | Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
