Variant report

Variant	rs10261669
Chromosome Location	chr7:38698327-38698328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10234050	1.00[AMR][1000 genomes]
rs10236184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262739	1.00[AMR][1000 genomes]
rs10264142	1.00[AMR][1000 genomes]
rs10265859	1.00[AMR][1000 genomes]
rs12386768	1.00[AMR][1000 genomes]
rs2163715	1.00[EUR][1000 genomes]
rs28393327	1.00[AMR][1000 genomes]
rs28681314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38695600-38700000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:38695600-38700200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:38696000-38726000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:38698000-38699400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr7:38698200-38698800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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