Variant report

Variant	rs10262051
Chromosome Location	chr7:98594745-98594746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98587774..98589544-chr7:98593362..98595424,2	K562	blood:
2	chr7:98593014..98596365-chr7:98598996..98601771,4	K562	blood:
3	chr7:98593106..98595742-chr7:98596937..98599097,2	MCF-7	breast:
4	chr7:98593545..98595673-chr7:98628672..98631512,2	K562	blood:

Variant related genes	Relation type
ENSG00000242687	Chromatin interaction
ENSG00000238109	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10081297	0.89[AMR][1000 genomes]
rs10238626	0.82[AFR][1000 genomes]
rs10238845	0.83[AFR][1000 genomes]
rs4593455	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
2	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
9	chr7:98482400-98613600	Strong transcription	Dnd41	blood
10	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:98486200-98596400	Strong transcription	Fetal Intestine Large	intestine
12	chr7:98487200-98603000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:98512800-98594800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr7:98520800-98598400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:98522000-98614200	Strong transcription	Liver	Liver
16	chr7:98529400-98614800	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr7:98529600-98614400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:98529600-98614600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr7:98531000-98613600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:98531000-98613600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:98542800-98618400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:98543000-98613600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:98543600-98595000	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:98555000-98594800	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:98558800-98598800	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr7:98566800-98596600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr7:98567000-98596400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr7:98570800-98595000	Strong transcription	Hela-S3	cervix
29	chr7:98573800-98595000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:98579000-98597400	Strong transcription	NH-A	brain
31	chr7:98579200-98601000	Strong transcription	HepG2	liver
32	chr7:98583800-98594800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:98584000-98598000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:98584000-98602400	Strong transcription	Primary B cells from cord blood	blood
36	chr7:98584000-98611800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:98584000-98613800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:98584000-98614600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:98584200-98599400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:98584600-98614200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:98584600-98614600	Strong transcription	Fetal Muscle Leg	muscle
42	chr7:98584800-98618400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:98585200-98594800	Strong transcription	Lung	lung
44	chr7:98585400-98613600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:98585600-98614600	Strong transcription	Fetal Stomach	stomach
46	chr7:98585800-98594800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:98586200-98614200	Strong transcription	Fetal Intestine Small	intestine
48	chr7:98587000-98613600	Strong transcription	Primary T cells from cord blood	blood
49	chr7:98587000-98613600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:98587400-98614000	Strong transcription	Thymus	Thymus

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