Variant report

Variant	rs10262492
Chromosome Location	chr7:128151258-128151259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10241284	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10257068	0.84[EUR][1000 genomes]
rs10257074	0.84[EUR][1000 genomes]
rs10258178	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13233022	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34774721	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6943285	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6950557	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6954360	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6957937	0.85[AFR][1000 genomes]
rs6975701	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7792770	0.84[EUR][1000 genomes]
rs7806863	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7807302	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9690423	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9986842	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10262492	METTL2B	cis	Artery Tibial	GTEx
rs10262492	METTL2B	cis	Skin Sun Exposed Lower leg	GTEx
rs10262492	METTL2B	cis	Thyroid	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128141800-128152000	Weak transcription	K562	blood
6	chr7:128142000-128151400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:128142200-128152600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:128142400-128152200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:128142600-128152000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:128142800-128152000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:128144000-128152000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:128145000-128151400	Weak transcription	Fetal Stomach	stomach
16	chr7:128146200-128151600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr7:128148800-128151600	Weak transcription	GM12878-XiMat	blood
18	chr7:128151200-128151800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links