Variant report

Variant	rs10266314
Chromosome Location	chr7:109229384-109229385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10499979	0.81[EUR][1000 genomes]
rs11521007	0.80[EUR][1000 genomes]
rs1464744	0.81[EUR][1000 genomes]
rs1524273	0.80[EUR][1000 genomes]
rs1616510	0.81[EUR][1000 genomes]
rs1721445	0.81[EUR][1000 genomes]
rs1721448	0.81[EUR][1000 genomes]
rs1721898	0.81[EUR][1000 genomes]
rs1721899	0.81[EUR][1000 genomes]
rs17463939	0.81[EUR][1000 genomes]
rs17464044	0.81[EUR][1000 genomes]
rs1880236	0.81[EUR][1000 genomes]
rs2103123	0.83[EUR][1000 genomes]
rs2140585	0.81[EUR][1000 genomes]
rs2140587	0.83[EUR][1000 genomes]
rs56165817	0.83[EUR][1000 genomes]
rs62473267	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109211800-109234000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:109221200-109234400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:109225800-109230000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:109226400-109229600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr7:109227400-109229400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:109228400-109237800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:109228800-109229600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:109228800-109230200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:109228800-109231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:109229200-109229400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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