Variant report

Variant	rs10266701
Chromosome Location	chr7:150723212-150723213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:150723022-150723392	K562	blood:	n/a	n/a
2	MAFK	chr7:150722998-150723525	K562	blood:	n/a	chr7:150723213-150723223
3	MAFK	chr7:150723107-150723255	HepG2	liver:	n/a	chr7:150723213-150723223
4	CEBPB	chr7:150722973-150723286	K562	blood:	n/a	n/a
5	MYC	chr7:150723115-150726136	K562	blood:	n/a	n/a
6	RCOR1	chr7:150723163-150723658	K562	blood:	n/a	n/a
7	IRF1	chr7:150722909-150726094	K562	blood:	n/a	chr7:150725350-150725359
8	FOSL2	chr7:150722931-150723467	MCF-7	breast:	n/a	chr7:150723212-150723222
9	CEBPB	chr7:150723036-150723322	A549	lung:	n/a	n/a
10	TEAD4	chr7:150723005-150724168	K562	blood:	n/a	n/a
11	TEAD4	chr7:150722934-150724176	K562	blood:	n/a	n/a
12	MAFK	chr7:150723050-150723350	HepG2	liver:	n/a	chr7:150723213-150723223
13	FOS	chr7:150723002-150723328	MCF10A-Er-Src	breast:	n/a	chr7:150723212-150723222
14	TBL1XR1	chr7:150723099-150724829	K562	blood:	n/a	n/a
15	STAT1	chr7:150723189-150724572	K562	blood:	n/a	chr7:150723519-150723527
16	MAX	chr7:150722995-150726538	K562	blood:	n/a	n/a
17	CEBPB	chr7:150723014-150723314	IMR90	lung:	n/a	n/a
18	POLR2A	chr7:150723040-150726571	K562	blood:	n/a	n/a
19	MAFK	chr7:150722841-150723400	Hela-S3	cervix:	n/a	chr7:150723213-150723223
20	JUND	chr7:150722999-150724800	K562	blood:	n/a	chr7:150723212-150723222
21	FOS	chr7:150723077-150723294	MCF10A-Er-Src	breast:	n/a	chr7:150723212-150723222
22	TBL1XR1	chr7:150723212-150724800	K562	blood:	n/a	n/a
23	MAFK	chr7:150723172-150723255	H1-hESC	embryonic stem cell:	n/a	chr7:150723213-150723223
24	MAFK	chr7:150723048-150723404	IMR90	lung:	n/a	chr7:150723213-150723223
25	FOS	chr7:150723034-150723313	MCF10A-Er-Src	breast:	n/a	chr7:150723212-150723222
26	YY1	chr7:150723086-150723248	HCT-116	colon:	n/a	n/a
27	JUN	chr7:150722625-150726841	K562	blood:	n/a	chr7:150723212-150723222
28	POLR2A	chr7:150722985-150723295	HCT-116	colon:	n/a	n/a
29	YY1	chr7:150723071-150723471	K562	blood:	n/a	n/a
30	CEBPB	chr7:150722968-150723322	Hela-S3	cervix:	n/a	n/a
31	FOS	chr7:150723093-150723324	MCF10A-Er-Src	breast:	n/a	chr7:150723212-150723222
32	CBX3	chr7:150722906-150726571	K562	blood:	n/a	n/a
33	TAL1	chr7:150723116-150724836	K562	blood:	n/a	n/a
34	MAFF	chr7:150723126-150723308	HepG2	liver:	n/a	n/a
35	GATA1	chr7:150723194-150726151	PBDE	blood:	n/a	chr7:150725351-150725361 chr7:150723521-150723534
36	MAFF	chr7:150723040-150724483	K562	blood:	n/a	n/a
37	MAX	chr7:150723070-150723347	K562	blood:	n/a	n/a
38	NR2F2	chr7:150722926-150726419	K562	blood:	n/a	n/a
39	CHD2	chr7:150723210-150724064	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150713297..150718122-chr7:150719622..150723511,6	MCF-7	breast:
2	chr7:150722965..150724842-chr7:150872237..150873917,2	MCF-7	breast:
3	chr7:150718943..150723286-chr7:150723746..150726907,4	MCF-7	breast:
4	chr7:150102772..150104339-chr7:150722902..150724548,2	K562	blood:
5	chr7:150713283..150718085-chr7:150719345..150725201,8	MCF-7	breast:

Variant related genes	Relation type
ATG9B	TF binding region
ABCB8	TF binding region
ENSG00000196456	Chromatin interaction
ENSG00000243433	Chromatin interaction
ENSG00000181652	Chromatin interaction
ENSG00000197150	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11769158	1.00[AFR][1000 genomes]
rs13307588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6979693	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
7	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
8	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv889471	chr7:150700946-150751590	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv526410	chr7:150714812-150775306	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150716200-150725000	Weak transcription	Right Atrium	heart
2	chr7:150718600-150723400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:150718600-150723400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:150720200-150725000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:150720800-150724400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:150721000-150723800	Weak transcription	Fetal Lung	lung
7	chr7:150721400-150724600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:150721600-150725000	Enhancers	Placenta	Placenta
9	chr7:150722000-150725000	Weak transcription	Esophagus	oesophagus
10	chr7:150722600-150724400	Enhancers	NHEK	skin
11	chr7:150722600-150725000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:150722800-150724000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr7:150722800-150724600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:150722800-150724600	Enhancers	Hela-S3	cervix
15	chr7:150722800-150724800	Weak transcription	Thymus	Thymus
16	chr7:150722800-150725000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:150722800-150725000	Enhancers	HMEC	breast
18	chr7:150723000-150723400	Enhancers	A549	lung
19	chr7:150723000-150723400	Enhancers	HSMM	muscle
20	chr7:150723000-150723400	Enhancers	NHLF	lung
21	chr7:150723000-150723800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:150723200-150723400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr7:150723200-150723400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr7:150723200-150723400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:150723200-150723800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr7:150723200-150723800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr7:150723200-150724000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:150723200-150724000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:150723200-150724600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:150723200-150725200	Flanking Active TSS	K562	blood

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