Variant report

Variant	rs10268041
Chromosome Location	chr7:103350731-103350732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10229126	1.00[AMR][1000 genomes]
rs10230117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239666	1.00[AMR][1000 genomes]
rs10280574	1.00[AMR][1000 genomes]
rs10281984	1.00[AMR][1000 genomes]
rs17154750	1.00[AMR][1000 genomes]
rs28410999	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103348000-103353800	Weak transcription	HepG2	liver
3	chr7:103350000-103351400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:103350400-103351200	Enhancers	NHDF-Ad	bronchial
5	chr7:103350400-103351800	Enhancers	Osteobl	bone
6	chr7:103350400-103352000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:103350600-103350800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:103350600-103350800	Enhancers	Hela-S3	cervix
9	chr7:103350600-103351400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:103350600-103351800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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