Variant report

Variant	rs10268332
Chromosome Location	chr7:140407035-140407036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140372745..140374926-chr7:140405563..140407158,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146966	Chromatin interaction
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10227617	0.91[AFR][1000 genomes]
rs10229313	0.89[YRI][hapmap]
rs10236570	1.00[CEU][hapmap]
rs10247753	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10251357	0.82[ASW][hapmap]
rs10254605	0.89[YRI][hapmap]
rs10441168	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv869260	chr7:140404835-140542905	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140397600-140407400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:140398000-140408800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:140398000-140419400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:140398000-140466600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:140398200-140473800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:140398200-140492600	Weak transcription	Colonic Mucosa	Colon
7	chr7:140398400-140408400	Weak transcription	NHDF-Ad	bronchial
8	chr7:140398400-140422000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:140398400-140432200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:140398600-140414800	Weak transcription	Small Intestine	intestine
11	chr7:140398600-140459400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:140398600-140491800	Weak transcription	Fetal Brain Male	brain
13	chr7:140399400-140414200	Weak transcription	Gastric	stomach
14	chr7:140399400-140468200	Weak transcription	Right Ventricle	heart
15	chr7:140399600-140408000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:140399600-140443800	Weak transcription	Fetal Heart	heart
17	chr7:140400000-140474000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:140402200-140407200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:140402200-140407200	Strong transcription	Primary T cells from cord blood	blood
20	chr7:140402200-140407200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:140402400-140407200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:140402400-140407200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr7:140402400-140408200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:140402600-140407200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:140402600-140407200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:140402600-140407200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:140402600-140407200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:140402600-140407200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:140402600-140407200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:140402600-140407200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:140402600-140407200	Strong transcription	Fetal Intestine Large	intestine
32	chr7:140402600-140407200	Strong transcription	Fetal Intestine Small	intestine
33	chr7:140402600-140407200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr7:140402600-140407200	Strong transcription	Fetal Muscle Leg	muscle
35	chr7:140402600-140407200	Strong transcription	Fetal Stomach	stomach
36	chr7:140402600-140407200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr7:140402600-140407200	Strong transcription	Thymus	Thymus
38	chr7:140402600-140407200	Strong transcription	Dnd41	blood
39	chr7:140402600-140407400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:140402600-140407600	Strong transcription	Fetal Thymus	thymus
41	chr7:140402800-140407200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:140402800-140407200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:140402800-140407200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:140402800-140407200	Strong transcription	Placenta	Placenta
45	chr7:140402800-140407200	Strong transcription	Left Ventricle	heart
46	chr7:140402800-140408400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:140403000-140407200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr7:140403000-140407200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:140403000-140407200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:140403200-140407200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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