Variant report

Variant	rs10268431
Chromosome Location	chr7:117454867-117454868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116754962-116765597..7:117452391-117455280	Hela-S3	cervix:
2	chr7:117445818..117448330-chr7:117452040..117454903,3	MCF-7	breast:
3	7:116434729-116454408..7:117452391-117455280	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000198898	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10248793	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56278833	0.82[AFR][1000 genomes]
rs57627307	0.85[AFR][1000 genomes]
rs7800668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:117448600-117458400	Weak transcription	Esophagus	oesophagus
3	chr7:117449000-117467200	Weak transcription	Fetal Brain Female	brain
4	chr7:117449600-117455800	Weak transcription	Adipose Nuclei	Adipose
5	chr7:117449600-117458400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:117450200-117458400	Weak transcription	Fetal Brain Male	brain
7	chr7:117450400-117455800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:117451000-117455800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:117451000-117456400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:117451200-117455200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:117451200-117456000	Weak transcription	NHLF	lung
12	chr7:117451200-117456200	Weak transcription	NH-A	brain
13	chr7:117451400-117455800	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:117451400-117455800	Weak transcription	Brain Substantia Nigra	brain
15	chr7:117451400-117456000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:117451600-117455600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:117451600-117455800	Weak transcription	Fetal Heart	heart
18	chr7:117451600-117456400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:117451600-117459200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:117453000-117456000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:117453800-117455800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:117453800-117456000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:117453800-117458200	Weak transcription	Brain Anterior Caudate	brain
24	chr7:117453800-117458400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:117454000-117459400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:117454600-117458600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:117454800-117455000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:117454800-117456000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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