Variant report

Variant	rs10268974
Chromosome Location	chr7:67554612-67554613
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:67554611-67554661	GM06990	blood:	n/a
2	chr7:67554611-67554661	NB4	blood:	n/a
3	chr7:67554611-67554661	K562	blood:	n/a
4	chr7:67554611-67554661	PFSK-1	brain:	n/a
5	chr7:67554611-67554661	ProgFib	skin:	n/a
6	chr7:67554611-67554661	HEK293	kidney:	embryo
7	chr7:67554611-67554661	ovcar-3	ovarian:	n/a
8	chr7:67554611-67554661	AG10803	skin:	n/a
9	chr7:67554611-67554661	HRPEpiC	eye:	n/a
10	chr7:67554611-67554661	NH-A	brain:	n/a
11	chr7:67554611-67554661	HCT-116	colon:	n/a
12	chr7:67554611-67554661	SK-N-MC	brain:	n/a
13	chr7:67554611-67554661	H1-hESC	embryonic stem cell:	embryo
14	chr7:67554611-67554661	AoSMC	blood vessel:	n/a
15	chr7:67554611-67554661	U87	brain:	n/a
16	chr7:67554611-67554661	NHBE	bronchial:	n/a
17	chr7:67554611-67554661	HNPCEpiC	eye:	n/a
18	chr7:67554611-67554661	HCM	heart:	n/a
19	chr7:67554611-67554661	GM19239	blood:	n/a
20	chr7:67554611-67554661	HRCEpiC	kidney:	n/a
21	chr7:67554611-67554661	HPAEpiC	pulmonary alveolar:	n/a
22	chr7:67554611-67554661	BE2_C	brain:	n/a
23	chr7:67554611-67554661	AG09309	skin:	n/a
24	chr7:67554611-67554661	GM12878	blood:	n/a
25	chr7:67554611-67554661	HMEC	breast:	n/a
26	chr7:67554611-67554661	SKMC	muscle:	n/a
27	chr7:67554611-67554661	HRE	kidney:	n/a
28	chr7:67554611-67554661	BJ	skin:	n/a
29	chr7:67554611-67554661	HEEpiC	esophagus:	n/a
30	chr7:67554611-67554661	ECC-1	luminal epithelium:	n/a
31	chr7:67554611-67554661	GM12892	blood:	n/a
32	chr7:67554611-67554661	SK-N-SH_RA	brain:	n/a
33	chr7:67554611-67554661	AG04449	skin:	fetal
34	chr7:67554611-67554661	AG09319	gingival:	n/a
35	chr7:67554611-67554661	HCF	heart:	n/a
36	chr7:67554611-67554661	HL-60	blood:	n/a
37	chr7:67554611-67554661	HUVEC	blood vessel:	n/a
38	chr7:67554611-67554661	SK-N-SH	brain:	n/a
39	chr7:67554611-67554661	HIPEpiC	eye:	n/a
40	chr7:67554611-67554661	Hela-S3	cervix:	n/a
41	chr7:67554611-67554661	Caco-2	colon:	n/a
42	chr7:67554611-67554661	A549	lung:	n/a
43	chr7:67554611-67554661	HCPEpiC	choroid plexus:	n/a
44	chr7:67554611-67554661	Hepatocyte	liver:	n/a
45	chr7:67554611-67554661	MCF10A-Er-Src	breast:	n/a
46	chr7:67554611-67554661	AG04450	lung:	fetal
47	chr7:67554611-67554661	RPTEC	kidney:	n/a
48	chr7:67554611-67554661	MCF-7	breast:	n/a
49	chr7:67554611-67554661	T-47D	breast:	n/a
50	chr7:67554611-67554661	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
ENSG00000236531	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10243657	0.92[ASN][1000 genomes]
rs10244013	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10265224	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607428	chr7:67526074-67788551	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv966841	chr7:67545320-67568295	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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