Variant report

Variant	rs10269788
Chromosome Location	chr7:117440972-117440973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117438508..117441422-chr7:117442671..117444866,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10233110	1.00[CEU][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10257581	0.88[EUR][1000 genomes]
rs12530721	1.00[MEX][hapmap]
rs28414508	0.97[EUR][1000 genomes]
rs28441380	0.97[EUR][1000 genomes]
rs28622152	0.97[EUR][1000 genomes]
rs34605897	0.91[EUR][1000 genomes]
rs34643488	0.91[EUR][1000 genomes]
rs34787450	0.91[EUR][1000 genomes]
rs35018341	0.97[EUR][1000 genomes]
rs35683365	0.91[EUR][1000 genomes]
rs36073009	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117421400-117444400	Weak transcription	Fetal Heart	heart
3	chr7:117428400-117448600	Weak transcription	Fetal Kidney	kidney
4	chr7:117431800-117447800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
6	chr7:117432400-117447600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:117432400-117447800	Weak transcription	Brain Germinal Matrix	brain
8	chr7:117432600-117446000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:117432600-117446200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:117432600-117447600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:117432600-117447800	Weak transcription	Fetal Lung	lung
12	chr7:117432600-117448800	Weak transcription	Fetal Intestine Small	intestine
13	chr7:117432800-117441000	Weak transcription	NHLF	lung
14	chr7:117432800-117445200	Weak transcription	Fetal Brain Female	brain
15	chr7:117432800-117446000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:117432800-117447600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:117432800-117448200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
19	chr7:117433800-117444000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:117433800-117444000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:117433800-117447800	Weak transcription	Esophagus	oesophagus
22	chr7:117434200-117447000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:117434800-117445400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:117434800-117447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:117437400-117444800	Weak transcription	Pancreas	Pancrea
26	chr7:117437400-117445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr7:117437600-117443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:117437600-117447800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:117439600-117441200	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:117439600-117441600	Enhancers	Brain Hippocampus Middle	brain
32	chr7:117439800-117441800	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr7:117440000-117441200	Enhancers	Brain Angular Gyrus	brain
34	chr7:117440000-117441400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:117440200-117441000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr7:117440400-117441800	Enhancers	Fetal Brain Male	brain
37	chr7:117440400-117445200	Weak transcription	Brain Substantia Nigra	brain
38	chr7:117440800-117441600	Enhancers	Brain Inferior Temporal Lobe	brain

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