Variant report

Variant	rs10269909
Chromosome Location	chr7:150380701-150380702
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr7:150380511-150380798	GM12892	blood:	n/a	n/a
2	YY1	chr7:150380599-150380767	GM12892	blood:	n/a	n/a
3	RUNX3	chr7:150380631-150380997	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150380547..150382670-chr7:150386657..150389613,3	K562	blood:

Variant related genes	Relation type
GIMAP2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10232902	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150373200-150380800	Weak transcription	Thymus	Thymus
2	chr7:150375600-150382000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:150376200-150382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:150376400-150381200	Weak transcription	Spleen	Spleen
5	chr7:150380000-150382000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr7:150380000-150382000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr7:150380200-150380800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:150380400-150380800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:150380400-150380800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr7:150380400-150380800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:150380400-150380800	Enhancers	Dnd41	blood
12	chr7:150380400-150381000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:150380400-150381200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:150380400-150381200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr7:150380400-150381600	ZNF genes & repeats	GM12878-XiMat	blood
16	chr7:150380400-150382000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:150380400-150382200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:150380400-150382200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr7:150380400-150382600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr7:150380600-150381000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr7:150380600-150381000	Enhancers	Fetal Thymus	thymus
22	chr7:150380600-150381400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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