Variant report

Variant	rs10270148
Chromosome Location	chr7:83685362-83685363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10279219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57380303	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888626	chr7:83651854-83698177	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83671800-83687400	Weak transcription	Fetal Intestine Large	intestine
2	chr7:83672000-83685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:83673200-83688200	Weak transcription	NHLF	lung
4	chr7:83673800-83687400	Weak transcription	NH-A	brain
5	chr7:83673800-83707600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:83674600-83687600	Weak transcription	Fetal Lung	lung
7	chr7:83674600-83689600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:83675800-83688400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:83678800-83690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:83684600-83686000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:83684800-83685800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:83685000-83685800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:83685000-83685800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:83685000-83686800	Enhancers	Hela-S3	cervix
15	chr7:83685200-83685400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr7:83685200-83685600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:83685200-83685600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:83685200-83685800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:83685200-83686000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:83685200-83686400	Enhancers	HMEC	breast
21	chr7:83685200-83686800	Enhancers	NHEK	skin

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