Variant report

Variant	rs10270326
Chromosome Location	chr7:66180526-66180527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10081172	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10156059	0.82[EUR][1000 genomes]
rs10224189	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10224536	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10225392	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10226191	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10226294	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10228381	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10229580	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10231860	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10234640	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10234747	0.82[EUR][1000 genomes]
rs10235037	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10236665	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10237244	0.82[EUR][1000 genomes]
rs10239200	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240153	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240582	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10241395	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10243608	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10244459	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10244602	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10245017	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10247324	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10247815	0.82[EUR][1000 genomes]
rs10247852	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10252133	0.82[EUR][1000 genomes]
rs10255813	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10256117	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257393	0.82[EUR][1000 genomes]
rs10258628	0.82[EUR][1000 genomes]
rs10264619	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10265154	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10266041	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10266792	0.86[EUR][1000 genomes]
rs10267834	0.85[EUR][1000 genomes]
rs10271177	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10273320	0.86[EUR][1000 genomes]
rs10273402	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275413	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10277231	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10278343	0.86[EUR][1000 genomes]
rs10278763	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280431	0.80[EUR][1000 genomes]
rs10280717	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10281544	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10281734	0.82[EUR][1000 genomes]
rs10282310	0.82[EUR][1000 genomes]
rs10282522	0.86[EUR][1000 genomes]
rs10479728	0.86[EUR][1000 genomes]
rs1060527	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1064795	0.82[EUR][1000 genomes]
rs12234826	0.86[EUR][1000 genomes]
rs12333749	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12334214	0.82[EUR][1000 genomes]
rs13437901	0.82[EUR][1000 genomes]
rs13437994	0.86[EUR][1000 genomes]
rs13438432	0.82[EUR][1000 genomes]
rs16868546	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17138208	0.82[EUR][1000 genomes]
rs17138274	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17747927	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17748115	0.86[EUR][1000 genomes]
rs1882656	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1882657	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1895134	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2013707	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28368585	0.86[EUR][1000 genomes]
rs28375318	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28379824	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28455065	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28460006	0.82[EUR][1000 genomes]
rs28472679	0.84[EUR][1000 genomes]
rs28474923	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28501161	0.84[EUR][1000 genomes]
rs28526115	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28533332	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28547918	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28606020	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28607736	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28634091	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28641990	0.84[EUR][1000 genomes]
rs28657758	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28663128	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28675035	0.84[EUR][1000 genomes]
rs3764904	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3778907	0.82[EUR][1000 genomes]
rs3778908	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800814	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3814464	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3823607	0.86[EUR][1000 genomes]
rs3823609	0.82[EUR][1000 genomes]
rs3962133	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4587218	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57774708	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57875851	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57902746	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58123804	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58973756	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59079543	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59693594	0.86[EUR][1000 genomes]
rs60026498	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60344524	0.88[ASN][1000 genomes]
rs61700307	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964080	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973897	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974601	0.86[EUR][1000 genomes]
rs73133809	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73133816	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73133851	0.85[EUR][1000 genomes]
rs73133859	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73133865	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135905	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135907	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135909	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135917	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135922	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135925	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135950	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135960	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73135973	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137960	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137963	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137978	0.96[ASN][1000 genomes]
rs73139941	0.86[EUR][1000 genomes]
rs73139976	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73141980	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73143921	0.81[EUR][1000 genomes]
rs73145924	0.86[EUR][1000 genomes]
rs73152719	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7809359	0.84[EUR][1000 genomes]
rs7809535	0.84[EUR][1000 genomes]
rs9654843	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv3385090	chr7:66146376-66205022	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3401338	chr7:66147493-66206298	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10270326	GS1-124K5.12	cis	Adipose Subcutaneous	GTEx
rs10270326	GS1-124K5.12	cis	lung	GTEx
rs10270326	GS1-124K5.12	cis	Artery Tibial	GTEx
rs10270326	GS1-124K5.12	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66148400-66182400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr7:66148400-66184400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:66148400-66184800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:66149000-66199600	Weak transcription	Thymus	Thymus
5	chr7:66149600-66190200	Weak transcription	Hela-S3	cervix
6	chr7:66153400-66182200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:66159600-66190600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:66159800-66180800	Weak transcription	Brain Germinal Matrix	brain
9	chr7:66162400-66189400	Weak transcription	Psoas Muscle	Psoas
10	chr7:66162600-66180600	Weak transcription	HMEC	breast
11	chr7:66162600-66192400	Weak transcription	NH-A	brain
12	chr7:66162600-66196800	Weak transcription	Right Ventricle	heart
13	chr7:66163000-66190800	Weak transcription	Esophagus	oesophagus
14	chr7:66164000-66180800	Weak transcription	HepG2	liver
15	chr7:66165200-66189800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:66165400-66182400	Weak transcription	Left Ventricle	heart
17	chr7:66165400-66188600	Weak transcription	Lung	lung
18	chr7:66165400-66204600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:66165800-66197000	Weak transcription	Right Atrium	heart
20	chr7:66169000-66187400	Weak transcription	Small Intestine	intestine
21	chr7:66172600-66180800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:66172600-66182800	Strong transcription	Fetal Lung	lung
23	chr7:66173000-66182400	Weak transcription	Gastric	stomach
24	chr7:66173000-66190400	Weak transcription	Fetal Heart	heart
25	chr7:66173200-66190600	Weak transcription	Brain Substantia Nigra	brain
26	chr7:66174200-66184600	Strong transcription	Osteobl	bone
27	chr7:66174200-66190400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:66175000-66183800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:66175000-66190800	Weak transcription	Pancreas	Pancrea
30	chr7:66175000-66190800	Weak transcription	Spleen	Spleen
31	chr7:66176400-66204600	Weak transcription	Colonic Mucosa	Colon
32	chr7:66177200-66191200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:66177400-66181200	Strong transcription	Liver	Liver
34	chr7:66177600-66181200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr7:66177600-66193600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:66177800-66182000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:66178000-66181400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:66178000-66186200	Weak transcription	Placenta	Placenta
39	chr7:66178600-66180600	Weak transcription	Fetal Intestine Large	intestine
40	chr7:66178600-66181000	Weak transcription	Fetal Brain Female	brain
41	chr7:66178600-66181400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:66178600-66186400	Weak transcription	Aorta	Aorta
43	chr7:66178600-66188400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr7:66178600-66200400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr7:66178800-66183800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:66178800-66183800	Weak transcription	Adipose Nuclei	Adipose
47	chr7:66178800-66186200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr7:66178800-66186600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:66178800-66190200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:66178800-66193600	Weak transcription	Brain Cingulate Gyrus	brain

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