Variant report

Variant	rs10270355
Chromosome Location	chr7:39959109-39959110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39957065..39959149-chr7:39987771..39989678,2	K562	blood:
2	chr7:39957754..39959391-chr7:40170682..40173574,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259826	Chromatin interaction
ENSG00000065883	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10225311	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11760665	0.91[EUR][1000 genomes]
rs11973720	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11975808	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11983868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12701774	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12701776	0.92[EUR][1000 genomes]
rs12701777	0.91[EUR][1000 genomes]
rs12701778	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1523711	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1608500	1.00[ASN][1000 genomes]
rs2049350	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2049351	0.85[EUR][1000 genomes]
rs2091092	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2329608	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2329609	0.93[ASN][1000 genomes]
rs2329610	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3966561	0.86[ASN][1000 genomes]
rs4720343	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4723914	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723915	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6462952	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6462953	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6947780	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6949575	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6957432	0.94[ASN][1000 genomes]
rs6969026	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6979770	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72589780	0.93[ASN][1000 genomes]
rs72589783	1.00[ASN][1000 genomes]
rs7777774	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7787480	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7789497	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9638946	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv887976	chr7:39874986-40018693	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv887977	chr7:39885541-40018693	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	esv3375265	chr7:39939761-39966001	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347596	chr7:39939761-39969926	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39950000-39965000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39959000-39959800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links