Variant report

Variant	rs10270406
Chromosome Location	chr7:16409537-16409538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16404670..16406505-chr7:16408648..16410407,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10254133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257559	1.00[AMR][1000 genomes]
rs10258090	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11973227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4513876	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73682120	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73682122	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv34392	chr7:16351845-16412625	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv508447	chr7:16360614-16446053	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1031019	chr7:16377519-16458474	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1028556	chr7:16404615-16440024	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16396000-16416000	Weak transcription	HSMMtube	muscle
2	chr7:16397600-16409600	Weak transcription	Fetal Stomach	stomach
3	chr7:16398000-16409600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:16398000-16409800	Weak transcription	Esophagus	oesophagus
5	chr7:16398000-16415400	Weak transcription	Left Ventricle	heart
6	chr7:16398000-16417400	Weak transcription	Gastric	stomach
7	chr7:16402000-16409600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:16402200-16416000	Weak transcription	Liver	Liver
9	chr7:16403600-16415200	Weak transcription	Psoas Muscle	Psoas
10	chr7:16405000-16417400	Weak transcription	Right Ventricle	heart
11	chr7:16406000-16413600	Weak transcription	K562	blood
12	chr7:16407000-16414600	Weak transcription	Fetal Lung	lung
13	chr7:16408600-16409600	Enhancers	Stomach Mucosa	stomach
14	chr7:16409400-16409600	Strong transcription	Ovary	ovary
15	chr7:16409400-16410000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:16409400-16410000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr7:16409400-16410400	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr7:16409400-16410800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:16409400-16411000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:16409400-16412600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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