Variant report

Variant	rs10270667
Chromosome Location	chr7:15976948-15976949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10950590	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1406099	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28506135	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60045739	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60467187	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6965353	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73680173	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs800701	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15973600-15979600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:15973800-15977800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:15974000-15977400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:15975600-15978200	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:15976800-15977400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:15976800-15978200	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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