Variant report

Variant	rs10270775
Chromosome Location	chr7:26554620-26554621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26553820..26557450-chr7:26559159..26560865,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12700742	0.86[JPT][hapmap]
rs12700746	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13243495	0.86[ASN][1000 genomes]
rs17153874	0.86[ASN][1000 genomes]
rs17284017	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2190186	1.00[JPT][hapmap]
rs2391282	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34066752	0.86[ASN][1000 genomes]
rs35496114	0.86[ASN][1000 genomes]
rs4722605	0.86[EUR][1000 genomes]
rs4722606	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6943220	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71521773	0.86[ASN][1000 genomes]
rs71521774	0.86[ASN][1000 genomes]
rs7784937	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807801	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886716	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs886717	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs886718	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886719	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26552200-26554800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:26552800-26556200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26553200-26555200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:26553800-26555000	Enhancers	Fetal Kidney	kidney
5	chr7:26553800-26555200	Enhancers	Pancreas	Pancrea
6	chr7:26554000-26555200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:26554200-26554800	Enhancers	Hela-S3	cervix
8	chr7:26554200-26555400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:26554400-26555200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:26554400-26555200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr7:26554400-26555600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links