The 2.0 version of rSNPBase

Variant report

Variant rs1027088
Chromosome Location chr12:26471008-26471009
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:26469000-26473400 Enhancers Breast Myoepithelial Primary Cells Breast
2 chr12:26469200-26471400 Enhancers HMEC breast
3 chr12:26469400-26471600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
4 chr12:26469400-26472800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
5 chr12:26469600-26471400 Weak transcription Placenta Placenta
6 chr12:26470000-26473200 Enhancers Primary B cells from peripheral blood blood
7 chr12:26470200-26472000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr12:26470200-26472800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr12:26470400-26471200 Enhancers Ovary ovary
10 chr12:26470400-26471600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr12:26470400-26472200 Enhancers HUVEC blood vessel
12 chr12:26470400-26473000 Enhancers NHLF lung
13 chr12:26470400-26473400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr12:26470600-26471400 Enhancers HepG2 liver
15 chr12:26470600-26472000 Enhancers Skeletal Muscle Male skeletal muscle
16 chr12:26470600-26473000 Enhancers NHDF-Ad bronchial
17 chr12:26470600-26473200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr12:26470600-26473200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr12:26470600-26473200 Enhancers NH-A brain
20 chr12:26470600-26473400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr12:26470800-26471400 Enhancers Muscle Satellite Cultured Cells --
22 chr12:26470800-26472000 Enhancers Brain Hippocampus Middle brain
23 chr12:26470800-26472000 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr12:26470800-26472200 Enhancers HSMMtube muscle
25 chr12:26470800-26472800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr12:26470800-26473000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
27 chr12:26470800-26473000 Enhancers Hela-S3 cervix
28 chr12:26470800-26473000 Enhancers Osteobl bone
29 chr12:26470800-26473200 Enhancers Fetal Muscle Leg muscle
30 chr12:26470800-26473200 Enhancers HSMM muscle
31 chr12:26470800-26473400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr12:26470800-26473400 Enhancers Fetal Intestine Large intestine
33 chr12:26471000-26471200 Flanking Active TSS GM12878-XiMat blood
34 chr12:26471000-26471600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr12:26471000-26471600 Enhancers Skeletal Muscle Female skeletal muscle
36 chr12:26471000-26471800 Enhancers Duodenum Smooth Muscle Duodenum
37 chr12:26471000-26471800 Enhancers Right Ventricle heart
38 chr12:26471000-26472000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr12:26471000-26472000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
40 chr12:26471000-26472000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr12:26471000-26472000 Enhancers Fetal Intestine Small intestine
42 chr12:26471000-26472000 Enhancers Left Ventricle heart
43 chr12:26471000-26472000 Enhancers Psoas Muscle Psoas
44 chr12:26471000-26472000 Enhancers Right Atrium heart
45 chr12:26471000-26472000 Enhancers K562 blood
46 chr12:26471000-26472000 Flanking Active TSS NHEK skin
47 chr12:26471000-26472200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
48 chr12:26471000-26472200 Enhancers Brain Anterior Caudate brain
49 chr12:26471000-26473000 Enhancers Adipose Nuclei Adipose

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015