Variant report

Variant	rs10270997
Chromosome Location	chr7:16312945-16312946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10247833	1.00[AFR][1000 genomes]
rs10255559	1.00[AFR][1000 genomes]
rs10255770	0.81[AFR][1000 genomes]
rs10262782	1.00[AFR][1000 genomes]
rs10274351	0.81[AFR][1000 genomes]
rs28617534	0.81[AFR][1000 genomes]
rs7801833	1.00[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757214	chr7:16236162-16334228	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv34298	chr7:16251754-16324185	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1017498	chr7:16262300-16313476	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1022814	chr7:16262300-16339988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16305200-16313200	Weak transcription	Fetal Lung	lung
2	chr7:16308800-16318000	Weak transcription	Left Ventricle	heart
3	chr7:16310200-16313400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:16310400-16315400	ZNF genes & repeats	K562	blood
5	chr7:16310800-16313200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:16311000-16313200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:16311400-16315600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:16311400-16318000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:16311600-16319000	Weak transcription	Aorta	Aorta
10	chr7:16312200-16315800	Weak transcription	Fetal Heart	heart
11	chr7:16312400-16313000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:16312400-16313000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:16312400-16318000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:16312400-16332800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:16312600-16313000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:16312800-16313000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr7:16312800-16313200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:16312800-16313200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:16312800-16313200	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr7:16312800-16313200	Weak transcription	Pancreas	Pancrea
21	chr7:16312800-16313400	Strong transcription	Ovary	ovary
22	chr7:16312800-16313600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr7:16312800-16313600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:16312800-16313600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:16312800-16313600	ZNF genes & repeats	Fetal Stomach	stomach
26	chr7:16312800-16313600	Strong transcription	Gastric	stomach
27	chr7:16312800-16315400	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links