Variant report

Variant	rs10271328
Chromosome Location	chr7:78961652-78961653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10230177	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10240268	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10241692	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10254948	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10270040	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10270645	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953823	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953827	0.82[ASN][1000 genomes]
rs10953828	0.83[ASN][1000 genomes]
rs10953835	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11535245	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766918	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11768754	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12154356	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12154470	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12154980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12216581	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536811	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12536914	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12538685	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12706101	0.81[ASN][1000 genomes]
rs12706102	0.81[ASN][1000 genomes]
rs13221173	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13224467	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13230407	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13230579	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13234027	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13243285	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13247562	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13306942	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1358473	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1406157	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1528263	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528265	0.83[ASN][1000 genomes]
rs1528269	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1528270	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1554833	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1554834	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1554835	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1554836	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1881292	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1881296	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242505	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28410701	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2886212	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34059048	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34983504	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35035926	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35512002	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4129689	0.83[ASN][1000 genomes]
rs4143262	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4256536	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4445162	0.83[ASN][1000 genomes]
rs4727838	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727841	0.83[ASN][1000 genomes]
rs4727843	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58309104	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62458964	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62458973	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6466593	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6946789	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6961357	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6965742	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7341488	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7790555	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7809944	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949496	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9648980	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9886146	0.81[ASN][1000 genomes]
rs9886330	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv517349	chr7:78958066-78963773	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78959200-78963400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78961400-78962000	Enhancers	NHLF	lung
3	chr7:78961400-78962000	Enhancers	Osteobl	bone
4	chr7:78961600-78961800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:78961600-78962000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:78961600-78962200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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