Variant report

Variant	rs10272084
Chromosome Location	chr7:147812699-147812700
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10256700	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262430	0.94[ASN][1000 genomes]
rs28641891	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813148	chr7:147796154-147837213	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147801800-147813400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:147805200-147814200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:147805200-147815400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:147805200-147817000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:147807800-147814200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:147807800-147814400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:147807800-147815400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:147807800-147815800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:147811000-147816400	Weak transcription	Brain Anterior Caudate	brain
10	chr7:147811800-147815600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:147812200-147812800	Enhancers	Brain Substantia Nigra	brain
12	chr7:147812200-147813000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:147812200-147814400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:147812400-147812800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:147812400-147812800	Enhancers	Brain Hippocampus Middle	brain
16	chr7:147812400-147814600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr7:147812400-147815200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:147812600-147812800	Enhancers	Fetal Intestine Small	intestine
19	chr7:147812600-147812800	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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