Variant report
| Variant | rs10272129 |
|---|---|
| Chromosome Location | chr7:119279371-119279372 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:119267813..119270560-chr7:119277143..119281317,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10085682 | 0.90[AFR][1000 genomes] |
| rs10227199 | 0.81[AFR][1000 genomes] |
| rs10241662 | 0.81[AFR][1000 genomes] |
| rs10252822 | 1.00[AFR][1000 genomes] |
| rs10258571 | 0.81[AFR][1000 genomes] |
| rs10260722 | 1.00[AFR][1000 genomes] |
| rs10271684 | 0.81[AFR][1000 genomes] |
| rs10279727 | 0.90[AFR][1000 genomes] |
| rs17142376 | 1.00[AFR][1000 genomes] |
| rs28546952 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949327 | chr7:119179990-119402882 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv889114 | chr7:119206096-119440159 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020551 | chr7:119232910-119292763 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 4 | nsv889115 | chr7:119270386-119577292 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
