Variant report

Variant	rs10273143
Chromosome Location	chr7:96817092-96817093
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10266441	1.00[AMR][1000 genomes]
rs10271173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446002	1.00[AMR][1000 genomes]
rs58750450	1.00[AMR][1000 genomes]
rs61453108	1.00[AMR][1000 genomes]
rs61568935	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96771400-96818200	Weak transcription	A549	lung
2	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:96803000-96818400	Weak transcription	Psoas Muscle	Psoas
6	chr7:96804000-96817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:96805400-96819000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:96809400-96817400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:96810000-96818000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:96812400-96817600	Weak transcription	Ovary	ovary
11	chr7:96812400-96818600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:96812400-96828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:96812600-96822200	Weak transcription	Liver	Liver
14	chr7:96812800-96823000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:96813000-96817800	Weak transcription	GM12878-XiMat	blood
16	chr7:96813200-96818600	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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