Variant report

Variant	rs10273978
Chromosome Location	chr7:67479064-67479065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10241075	1.00[AMR][1000 genomes]
rs10265047	0.86[AFR][1000 genomes]
rs10274392	1.00[AMR][1000 genomes]
rs10274616	1.00[AMR][1000 genomes]
rs10479680	1.00[AMR][1000 genomes]
rs10479736	1.00[AMR][1000 genomes]
rs6972801	1.00[AMR][1000 genomes]
rs9886233	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018756	chr7:67472370-67508145	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67474800-67479200	Weak transcription	Spleen	Spleen
2	chr7:67475200-67479200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:67477000-67480400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:67478200-67479200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:67478800-67479600	Enhancers	Fetal Brain Male	brain
6	chr7:67479000-67479600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:67479000-67479800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:67479000-67480000	Enhancers	Fetal Brain Female	brain
9	chr7:67479000-67480800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:67479000-67481000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:67479000-67481200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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