Variant report

Variant	rs10274368
Chromosome Location	chr7:79080862-79080863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:79080110-79083757	PFSK-1	brain:	n/a	n/a
2	MXI1	chr7:79080042-79084898	SK-N-SH	brain:	n/a	n/a
3	CHD1	chr7:79080270-79084340	IMR90	lung:	n/a	chr7:79081620-79081630
4	MXI1	chr7:79080860-79084788	IMR90	lung:	n/a	n/a
5	POLR2A	chr7:79080305-79084335	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
MAGI2-AS3	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10250567	0.93[AFR][1000 genomes]
rs10272831	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv427792	chr7:79039802-79253373	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv970902	chr7:79046674-79175610	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79072200-79081000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:79079800-79081000	Enhancers	A549	lung
3	chr7:79079800-79084600	Active TSS	NHLF	lung
4	chr7:79080000-79081000	Flanking Active TSS	HepG2	liver
5	chr7:79080200-79081000	Enhancers	Brain Substantia Nigra	brain
6	chr7:79080200-79084000	Active TSS	Brain Anterior Caudate	brain
7	chr7:79080400-79081000	Enhancers	Colon Smooth Muscle	Colon
8	chr7:79080400-79081000	Enhancers	Fetal Brain Female	brain
9	chr7:79080400-79081000	Enhancers	Fetal Heart	heart
10	chr7:79080400-79081000	Active TSS	Fetal Kidney	kidney
11	chr7:79080400-79084400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:79080400-79084600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:79080600-79081000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr7:79080600-79081200	Flanking Active TSS	Osteobl	bone
15	chr7:79080600-79084200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:79080600-79084400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:79080800-79081000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr7:79080800-79081000	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
19	chr7:79080800-79081000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:79080800-79081000	Enhancers	Adipose Nuclei	Adipose
21	chr7:79080800-79081000	Active TSS	Brain Angular Gyrus	brain
22	chr7:79080800-79081000	Active TSS	Brain Cingulate Gyrus	brain
23	chr7:79080800-79081000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr7:79080800-79081000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr7:79080800-79081000	Active TSS	HUVEC	blood vessel
26	chr7:79080800-79081000	Enhancers	NH-A	brain
27	chr7:79080800-79081200	Flanking Active TSS	NHEK	skin
28	chr7:79080800-79081400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:79080800-79081400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:79080800-79081400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr7:79080800-79081400	Flanking Active TSS	Liver	Liver
32	chr7:79080800-79081600	Active TSS	HMEC	breast
33	chr7:79080800-79082200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:79080800-79082400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:79080800-79083000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:79080800-79084000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:79080800-79084000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:79080800-79084400	Active TSS	Brain Hippocampus Middle	brain
39	chr7:79080800-79084400	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr7:79080800-79084600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:79080800-79084600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:79080800-79084600	Active TSS	NHDF-Ad	bronchial

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