Variant report

Variant	rs10274595
Chromosome Location	chr7:39641547-39641548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1113117	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11768335	0.87[AFR][1000 genomes]
rs12112104	0.86[ASN][1000 genomes]
rs12531635	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12534684	0.92[EUR][1000 genomes]
rs12701746	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2329453	0.84[ASN][1000 genomes]
rs34119925	0.92[EUR][1000 genomes]
rs4720327	0.86[ASN][1000 genomes]
rs4720328	0.84[ASN][1000 genomes]
rs4723876	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4723887	0.80[CHB][hapmap]
rs56211944	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62453607	0.86[ASN][1000 genomes]
rs62453608	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462932	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6943186	0.84[ASN][1000 genomes]
rs7808493	0.91[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39629600-39641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:39632600-39646000	Weak transcription	K562	blood
3	chr7:39632800-39641600	Weak transcription	Osteobl	bone
4	chr7:39634000-39641600	Weak transcription	HSMMtube	muscle
5	chr7:39638400-39646400	Weak transcription	Stomach Mucosa	stomach
6	chr7:39640400-39642400	Enhancers	NHDF-Ad	bronchial
7	chr7:39640400-39642800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:39640400-39645400	Enhancers	HSMM	muscle
9	chr7:39640800-39641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:39640800-39642200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:39641000-39641800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:39641400-39642400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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