Variant report

Variant	rs1027509
Chromosome Location	chr11:9214736-9214737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9213578..9215314-chr11:9219832..9222855,3	K562	blood:
2	chr11:9213877..9215396-chr11:9215969..9218065,2	K562	blood:
3	chr11:9213344..9215090-chr11:9220736..9222755,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9737147	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
3	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:9198400-9224600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:9200000-9225200	Weak transcription	Thymus	Thymus
13	chr11:9200200-9224800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:9200400-9216600	Weak transcription	Fetal Brain Male	brain
15	chr11:9200400-9223600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:9200400-9224200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:9200600-9224800	Weak transcription	Lung	lung
18	chr11:9200600-9224800	Weak transcription	Psoas Muscle	Psoas
19	chr11:9200600-9229000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:9200600-9230400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:9201000-9230800	Weak transcription	HMEC	breast
22	chr11:9202400-9224600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr11:9202400-9225000	Weak transcription	NHEK	skin
24	chr11:9202600-9224200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:9202600-9225000	Weak transcription	Aorta	Aorta
26	chr11:9202600-9251200	Weak transcription	Small Intestine	intestine
27	chr11:9202800-9224200	Weak transcription	Pancreas	Pancrea
28	chr11:9202800-9224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:9203000-9219800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:9203000-9224800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:9203200-9214800	Weak transcription	HepG2	liver
32	chr11:9203200-9224200	Weak transcription	NHLF	lung
33	chr11:9203200-9225000	Weak transcription	Right Ventricle	heart
34	chr11:9203200-9227200	Weak transcription	Right Atrium	heart
35	chr11:9203600-9225200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:9207400-9225200	Weak transcription	Gastric	stomach
37	chr11:9207600-9214800	Weak transcription	Fetal Heart	heart
38	chr11:9208000-9216000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:9208000-9219200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr11:9208200-9215800	Strong transcription	Fetal Stomach	stomach
41	chr11:9208600-9215800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:9208600-9215800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:9208800-9215800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:9209000-9215600	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr11:9209400-9225200	Weak transcription	Brain Angular Gyrus	brain
46	chr11:9209800-9215600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:9210000-9215200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:9210000-9224200	Weak transcription	Brain Anterior Caudate	brain
49	chr11:9210200-9214800	Weak transcription	Brain Substantia Nigra	brain
50	chr11:9210200-9215200	Weak transcription	Brain Cingulate Gyrus	brain

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