Variant report

Variant	rs10275729
Chromosome Location	chr7:14428943-14428944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10486032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12699643	1.00[CHB][hapmap]
rs13230666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13233118	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34148828	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35005116	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7811768	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14428200-14429200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:14428400-14429400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:14428400-14429400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:14428400-14429400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:14428400-14429600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:14428400-14429800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:14428600-14429200	Enhancers	Fetal Heart	heart
8	chr7:14428600-14429800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:14428600-14429800	Enhancers	Brain Germinal Matrix	brain
10	chr7:14428800-14429000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr7:14428800-14429200	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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