Variant report

Variant	rs10276275
Chromosome Location	chr7:107906855-107906856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107904463..107906961-chr7:107910225..107912402,2	MCF-7	breast:
2	chr7:107897446..107900433-chr7:107904725..107906956,2	K562	blood:
3	chr7:107897446..107899734-chr7:107904725..107907661,2	K562	blood:
4	chr7:107905891..107908548-chr7:107908939..107910827,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28457047	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107893200-107907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:107901600-107907800	Enhancers	Fetal Muscle Leg	muscle
4	chr7:107904000-107908600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:107904000-107910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:107904400-107907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:107904800-107909000	Weak transcription	HSMMtube	muscle
8	chr7:107906000-107911000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:107906600-107907000	Enhancers	Fetal Heart	heart
10	chr7:107906600-107907000	Enhancers	Pancreas	Pancrea
11	chr7:107906600-107907000	Genic enhancers	A549	lung
12	chr7:107906600-107907200	Enhancers	Fetal Brain Male	brain
13	chr7:107906600-107907400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:107906600-107908000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr7:107906600-107909600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:107906800-107907000	Bivalent Enhancer	Brain Hippocampus Middle	brain
17	chr7:107906800-107907000	Enhancers	Psoas Muscle	Psoas
18	chr7:107906800-107907000	Enhancers	HSMM	muscle
19	chr7:107906800-107907200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:107906800-107907200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:107906800-107907400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:107906800-107907400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:107906800-107907600	Enhancers	Fetal Brain Female	brain
24	chr7:107906800-107907800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:107906800-107907800	Enhancers	NH-A	brain

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