The 2.0 version of rSNPBase
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Variant report
Variant
rs10276831
Chromosome Location
chr7:126880169-126880170
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr7:126875739..126881778-chr7:126881781..126887011,8
K562
blood:
2
chr7:126879288..126881778-chr7:126885295..126887011,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000179603
Chromatin interaction
Extended variants information (count: 4 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs10227788
1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12333582
1.00[YRI][hapmap]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv889189
chr7:126699088-126963028
Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNA
7 gene(s)
inside rSNPs
diseases
2
esv1819919
chr7:126850298-126888714
Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links