Variant report

Variant	rs10277196
Chromosome Location	chr7:110717891-110717892
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1013941	1.00[AMR][1000 genomes]
rs1018931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216191	1.00[MEX][hapmap]
rs10224054	1.00[AMR][1000 genomes]
rs10227865	0.88[YRI][hapmap]
rs10228570	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230877	1.00[AMR][1000 genomes]
rs10232293	0.88[YRI][hapmap]
rs10242551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242934	0.89[YRI][hapmap]
rs10243966	1.00[AMR][1000 genomes]
rs10251428	0.82[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256013	1.00[AMR][1000 genomes]
rs10267396	0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278254	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10487303	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981225	1.00[AMR][1000 genomes]
rs17158187	0.82[ASW][hapmap]
rs17158330	1.00[MEX][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17158443	0.82[LWK][hapmap]
rs28657599	1.00[AMR][1000 genomes]
rs28690804	1.00[AMR][1000 genomes]
rs28711744	1.00[AMR][1000 genomes]
rs28753698	1.00[AMR][1000 genomes]
rs61554899	0.81[AFR][1000 genomes]
rs6945175	1.00[MEX][hapmap]
rs73418018	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420006	1.00[AMR][1000 genomes]
rs73420008	1.00[AMR][1000 genomes]
rs73420054	1.00[AMR][1000 genomes]
rs7802954	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531434	chr7:110310931-110839892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3506497	chr7:110484691-111091738	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3506498	chr7:110484750-111091689	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2758129	chr7:110523298-110787849	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759554	chr7:110523298-110787849	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1031546	chr7:110549137-110978256	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv817555	chr7:110564801-110990927	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1033286	chr7:110588021-110990928	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv539063	chr7:110588021-110990928	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv931978	chr7:110607590-111092490	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1025987	chr7:110609568-111258501	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv2830178	chr7:110645431-110778571	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1024477	chr7:110660006-110944477	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv608154	chr7:110688993-110945501	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110714600-110720200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:110714800-110720800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:110714800-110720800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:110714800-110720800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:110714800-110722200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:110715000-110720800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:110715000-110721800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:110715000-110721800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:110715200-110722000	Weak transcription	Fetal Lung	lung
10	chr7:110715200-110722400	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:110716200-110718000	Enhancers	Primary T cells from cord blood	blood
12	chr7:110716200-110718200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:110716200-110718200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:110716400-110722000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:110716800-110719800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:110716800-110721400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:110716800-110721800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:110716800-110722000	Weak transcription	NHLF	lung
19	chr7:110716800-110722200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:110717000-110722200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:110717200-110721800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:110717200-110721800	Weak transcription	NH-A	brain
23	chr7:110717400-110718000	Enhancers	Adipose Nuclei	Adipose
24	chr7:110717600-110718000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:110717600-110720800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:110717600-110721400	Weak transcription	Fetal Thymus	thymus
27	chr7:110717600-110721800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:110717800-110718000	Enhancers	Right Atrium	heart
29	chr7:110717800-110718200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr7:110717800-110720000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr7:110717800-110721600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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