Variant report

Variant	rs10278040
Chromosome Location	chr7:99141373-99141374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99098050..99100795-chr7:99139313..99142658,3	K562	blood:
2	chr7:99139926..99142315-chr7:99142970..99144488,2	MCF-7	breast:
3	chr7:99141181..99143038-chr7:99144864..99146762,2	K562	blood:
4	chr7:99129008..99131718-chr7:99137131..99141580,3	K562	blood:
5	chr7:99139837..99141473-chr7:99276738..99279035,2	K562	blood:
6	chr7:99125754..99128092-chr7:99141340..99143007,2	K562	blood:
7	chr7:99140989..99143038-chr7:99144638..99146762,3	K562	blood:

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction

rs_ID	r²[population]
rs10215854	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs10264505	1.00[AFR][1000 genomes]
rs10808112	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs11973173	0.86[YRI][hapmap]
rs12533251	0.97[AFR][1000 genomes]
rs13227522	0.92[AFR][1000 genomes]
rs28602855	0.92[AFR][1000 genomes]
rs28627543	0.86[AFR][1000 genomes]
rs34257469	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3779354	0.89[YRI][hapmap]
rs66509940	0.94[AFR][1000 genomes]
rs9632722	0.97[AFR][1000 genomes]
rs9656060	0.97[AFR][1000 genomes]

Disease	PMID	Source
Blood metabolite levels	24816252	GWAS catalog

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99131800-99144000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:99132600-99148600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:99133800-99145000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:99137400-99145400	Weak transcription	HepG2	liver
5	chr7:99138000-99141400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr7:99138200-99146400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:99138600-99144200	Weak transcription	Brain Anterior Caudate	brain
8	chr7:99138600-99144800	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:99138600-99144800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:99138600-99145200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:99138600-99145400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:99138600-99145400	Weak transcription	K562	blood
13	chr7:99138600-99145600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:99138600-99145600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:99138600-99148800	Weak transcription	Brain Substantia Nigra	brain
16	chr7:99138800-99145600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:99138800-99145600	Weak transcription	NHLF	lung
18	chr7:99139400-99144400	Weak transcription	Dnd41	blood
19	chr7:99139800-99141600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:99139800-99141800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:99140000-99148600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:99140200-99141800	ZNF genes & repeats	Fetal Lung	lung
23	chr7:99140200-99144400	ZNF genes & repeats	Fetal Stomach	stomach
24	chr7:99140400-99141400	Strong transcription	Ovary	ovary
25	chr7:99140400-99141600	ZNF genes & repeats	Colonic Mucosa	Colon
26	chr7:99140400-99142000	ZNF genes & repeats	Spleen	Spleen
27	chr7:99140400-99143000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:99140400-99144000	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:99140600-99141600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:99140600-99141600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:99140600-99141600	ZNF genes & repeats	Liver	Liver
32	chr7:99140600-99141800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:99140600-99141800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:99140600-99141800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:99140600-99141800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr7:99140600-99144000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:99140800-99141400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:99140800-99141600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:99140800-99141600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr7:99140800-99141800	Strong transcription	Brain Cingulate Gyrus	brain
41	chr7:99140800-99141800	Strong transcription	Fetal Brain Female	brain
42	chr7:99140800-99141800	ZNF genes & repeats	Pancreas	Pancrea
43	chr7:99140800-99141800	ZNF genes & repeats	Thymus	Thymus
44	chr7:99140800-99144400	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr7:99140800-99145000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:99141000-99141400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:99141000-99141600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:99141000-99141600	ZNF genes & repeats	HSMM	muscle
49	chr7:99141000-99141800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:99141000-99141800	ZNF genes & repeats	Brain Germinal Matrix	brain

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