Variant report

Variant	rs10278317
Chromosome Location	chr7:85010747-85010748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:85010741-85010791	ovcar-3	ovarian:	n/a
2	chr7:85010741-85010791	PANC-1	pancreas:	n/a
3	chr7:85010741-85010791	PFSK-1	brain:	n/a
4	chr7:85010741-85010791	NT2-D1	testis:	n/a
5	chr7:85010741-85010791	HCM	heart:	n/a
6	chr7:85010741-85010791	Hepatocyte	liver:	n/a
7	chr7:85010741-85010791	H1-hESC	embryonic stem cell:	embryo
8	chr7:85010741-85010791	ProgFib	skin:	n/a
9	chr7:85010741-85010791	HAEpiC	amniotic membrane:	n/a
10	chr7:85010741-85010791	A549	lung:	n/a
11	chr7:85010741-85010791	IMR90	lung:	fetal
12	chr7:85010741-85010791	K562	blood:	n/a
13	chr7:85010741-85010791	LNCaP	prostate:	n/a
14	chr7:85010741-85010791	AG09309	skin:	n/a
15	chr7:85010741-85010791	GM12892	blood:	n/a
16	chr7:85010741-85010791	HEEpiC	esophagus:	n/a
17	chr7:85010741-85010791	NHBE	bronchial:	n/a
18	chr7:85010741-85010791	MCF10A-Er-Src	breast:	n/a
19	chr7:85010741-85010791	AoSMC	blood vessel:	n/a
20	chr7:85010741-85010791	NB4	blood:	n/a
21	chr7:85010741-85010791	HRE	kidney:	n/a
22	chr7:85010741-85010791	HUVEC	blood vessel:	n/a
23	chr7:85010741-85010791	ECC-1	luminal epithelium:	n/a
24	chr7:85010741-85010791	SAEC	small airway:	n/a
25	chr7:85010741-85010791	AG04449	skin:	fetal
26	chr7:85010741-85010791	HCPEpiC	choroid plexus:	n/a
27	chr7:85010741-85010791	CMK	blood:	n/a
28	chr7:85010741-85010791	HNPCEpiC	eye:	n/a
29	chr7:85010741-85010791	NH-A	brain:	n/a
30	chr7:85010741-85010791	AG09319	gingival:	n/a
31	chr7:85010741-85010791	HEK293	kidney:	embryo
32	chr7:85010741-85010791	T-47D	breast:	n/a
33	chr7:85010741-85010791	HRPEpiC	eye:	n/a
34	chr7:85010741-85010791	HPAEpiC	pulmonary alveolar:	n/a
35	chr7:85010741-85010791	NHDF-neo	bronchial:	n/a
36	chr7:85010741-85010791	HCF	heart:	n/a
37	chr7:85010741-85010791	HepG2	liver:	n/a
38	chr7:85010741-85010791	SK-N-SH	brain:	n/a
39	chr7:85010741-85010791	Caco-2	colon:	n/a
40	chr7:85010741-85010791	GM19239	blood:	n/a
41	chr7:85010741-85010791	SK-N-SH_RA	brain:	n/a
42	chr7:85010741-85010791	AG04450	lung:	fetal
43	chr7:85010741-85010791	PrEC	prostate:	n/a
44	chr7:85010741-85010791	HMEC	breast:	n/a
45	chr7:85010741-85010791	BJ	skin:	n/a
46	chr7:85010741-85010791	MCF-7	breast:	n/a
47	chr7:85010741-85010791	HL-60	blood:	n/a
48	chr7:85010741-85010791	BE2_C	brain:	n/a
49	chr7:85010741-85010791	SKMC	muscle:	n/a
50	chr7:85010741-85010791	HIPEpiC	eye:	n/a

No data

Variant related genes	Relation type
ENSG00000230614	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10232271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10264385	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10264652	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7805322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1017834	chr7:84832489-85083958	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538996	chr7:84832489-85083958	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv888647	chr7:84866308-85091003	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv520264	chr7:85005259-85055666	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv981543	chr7:85010389-85012238	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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