Variant report

Variant	rs1027850
Chromosome Location	chr7:110188027-110188028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:110182691..110184718-chr7:110187881..110190742,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12705709	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12705710	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12705711	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs867069	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs867070	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs925156	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:105 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016758	chr7:109834827-110549197	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv539059	chr7:109834827-110549197	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1028635	chr7:109896582-110417137	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv539060	chr7:109896582-110417137	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv427800	chr7:109949176-110257457	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1023596	chr7:109984459-110708071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv539061	chr7:109984459-110708071	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv888968	chr7:110144415-110204292	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv888969	chr7:110147378-110334465	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1032498	chr7:110151471-110508283	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1018254	chr7:110152875-110195366	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1028190	chr7:110152875-110197412	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1032748	chr7:110157227-110195366	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1021693	chr7:110157227-110197412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1022043	chr7:110158246-110191057	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv5897	chr7:110160821-110208234	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1033233	chr7:110175198-110191057	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1811559	chr7:110178548-110188354	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv1805661	chr7:110179658-110188354	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3476591	chr7:110180216-110190414	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv967481	chr7:110180252-110188474	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2502104	chr7:110180561-110188742	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv436534	chr7:110180769-110188537	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3495201	chr7:110180866-110189514	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv511368	chr7:110181022-110192161	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3495194	chr7:110181266-110189414	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3495195	chr7:110181373-110188764	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv2559902	chr7:110181425-110189253	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3476595	chr7:110181441-110188705	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv1830055	chr7:110181738-110188322	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1824815	chr7:110181738-110189392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1847216	chr7:110181738-110189392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv2391776	chr7:110181763-110188629	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv3495198	chr7:110181820-110188528	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv3476594	chr7:110181835-110188528	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv511986	chr7:110181839-110188437	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv3495199	chr7:110181844-110188539	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv8200	chr7:110181870-110189059	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv3495193	chr7:110181879-110188472	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv3476592	chr7:110181879-110188535	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv824264	chr7:110181881-110188432	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv820590	chr7:110181881-110188513	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv824266	chr7:110181881-110188513	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv1793473	chr7:110181882-110188522	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
45	esv1804049	chr7:110181882-110188522	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv1817520	chr7:110181882-110188522	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv1824515	chr7:110181882-110188522	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv1825332	chr7:110181882-110188522	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	esv1826481	chr7:110181882-110188522	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv1846398	chr7:110181882-110188522	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110175200-110188400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:110183000-110188200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:110184400-110188600	Weak transcription	HMEC	breast
4	chr7:110185200-110188200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:110185200-110188200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:110188000-110189000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:110188000-110189200	Enhancers	NHEK	skin

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