Variant report

Variant	rs10279122
Chromosome Location	chr7:120879776-120879777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120865025..120867701-chr7:120877950..120880426,2	K562	blood:
2	chr7:120879517..120881994-chr7:120882337..120885417,3	K562	blood:
3	chr7:120879517..120881082-chr7:120883141..120886021,2	K562	blood:
4	chr7:120873011..120874844-chr7:120878339..120881386,3	K562	blood:
5	chr7:120878568..120880747-chr7:120916933..120919501,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10229198	0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10230185	1.00[CEU][hapmap]
rs10230310	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10252157	1.00[CEU][hapmap]
rs10259598	0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10260002	1.00[CEU][hapmap]
rs10274324	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13438127	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2691032	0.86[EUR][1000 genomes]
rs35793694	0.98[EUR][1000 genomes]
rs57977421	0.86[EUR][1000 genomes]
rs6951173	1.00[CEU][hapmap]
rs6965592	1.00[CEU][hapmap]
rs7808138	1.00[CEU][hapmap]
rs798913	0.86[EUR][1000 genomes]
rs798917	0.87[EUR][1000 genomes]
rs798918	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023611	chr7:120638930-120881658	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1030792	chr7:120662815-120917533	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1031282	chr7:120667937-120887301	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539099	chr7:120667937-120887301	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019025	chr7:120667937-120918696	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv539100	chr7:120667937-120918696	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv534342	chr7:120667938-120887300	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv428506	chr7:120719434-120891759	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv427802	chr7:120749159-120935856	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv1034353	chr7:120818382-121040576	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv1015979	chr7:120836198-120881658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv539101	chr7:120836198-120881658	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv889122	chr7:120860912-120906744	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120844800-120881600	Weak transcription	HSMMtube	muscle
2	chr7:120863000-120884200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr7:120866400-120882600	Strong transcription	K562	blood
4	chr7:120868600-120887600	Weak transcription	Right Ventricle	heart
5	chr7:120872600-120936600	Weak transcription	Psoas Muscle	Psoas
6	chr7:120873400-120888800	Weak transcription	Fetal Heart	heart
7	chr7:120874800-120884200	Weak transcription	Fetal Stomach	stomach
8	chr7:120875600-120880200	Weak transcription	Osteobl	bone
9	chr7:120876000-120884200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:120876000-120884200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:120876000-120884200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:120876000-120889000	Weak transcription	Fetal Lung	lung
13	chr7:120876200-120884200	Weak transcription	Pancreas	Pancrea
14	chr7:120876200-120884400	Weak transcription	NHDF-Ad	bronchial
15	chr7:120876400-120884200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:120876600-120884600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:120877000-120887600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:120877200-120880800	Strong transcription	Liver	Liver
19	chr7:120877400-120880800	Strong transcription	Adipose Nuclei	Adipose
20	chr7:120877600-120880400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:120877800-120884200	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:120878000-120888600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:120878400-120884200	Weak transcription	Aorta	Aorta
24	chr7:120878400-120886200	Weak transcription	Fetal Kidney	kidney
25	chr7:120878600-120884000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:120878600-120884200	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:120878600-120884600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:120879200-120880200	Weak transcription	Left Ventricle	heart
29	chr7:120879200-120881600	Weak transcription	HSMM	muscle
30	chr7:120879200-120883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:120879200-120884200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:120879200-120884600	Weak transcription	Ovary	ovary
33	chr7:120879200-120884800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:120879200-120886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:120879200-120887400	Weak transcription	NHLF	lung

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