Variant report

Variant	rs10279636
Chromosome Location	chr7:16070548-16070549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12537148	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13231687	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13235193	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13247695	0.89[ASN][1000 genomes]
rs1918853	0.81[EUR][1000 genomes]
rs2159505	0.84[EUR][1000 genomes]
rs35006616	0.92[ASN][1000 genomes]
rs6461217	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6461218	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461219	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461220	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6947417	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6959528	0.97[ASN][1000 genomes]
rs6979585	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980254	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9647968	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16066600-16074000	Weak transcription	Left Ventricle	heart
2	chr7:16066800-16080000	Weak transcription	Right Atrium	heart
3	chr7:16067400-16072600	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:16068000-16072600	Weak transcription	Fetal Heart	heart
5	chr7:16068600-16072600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:16068600-16074000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:16068800-16072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:16068800-16073800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:16068800-16074200	Weak transcription	Osteobl	bone
10	chr7:16069000-16074200	Weak transcription	NHLF	lung
11	chr7:16069200-16073600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:16069200-16073800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:16069200-16074000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:16069400-16072600	Weak transcription	NHDF-Ad	bronchial
15	chr7:16069600-16079200	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links