Variant report

Variant	rs10281682
Chromosome Location	chr7:139453261-139453262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139451601..139454262-chr7:139457480..139459306,2	MCF-7	breast:
2	chr7:139448622..139450978-chr7:139451066..139453744,3	K562	blood:
3	chr7:139452434..139456811-chr7:139460763..139464163,5	K562	blood:
4	chr7:139452624..139453717-chr7:139475690..139476509,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10273177	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28714444	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55700662	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56086211	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60258209	0.86[AFR][1000 genomes]
rs6947792	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963499	0.85[AMR][1000 genomes]
rs73735619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735622	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73735623	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73735625	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139432200-139461800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:139432400-139458600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:139432800-139469800	Weak transcription	Hela-S3	cervix
4	chr7:139433400-139455800	Enhancers	Brain Angular Gyrus	brain
5	chr7:139438400-139462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:139438400-139467000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:139438600-139462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:139438800-139466200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr7:139439000-139462800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:139440600-139454600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:139440600-139454600	Weak transcription	Fetal Brain Female	brain
12	chr7:139440600-139456000	Enhancers	Brain Anterior Caudate	brain
13	chr7:139440600-139457600	Enhancers	Brain Substantia Nigra	brain
14	chr7:139440600-139474600	Weak transcription	Fetal Brain Male	brain
15	chr7:139441000-139458400	Enhancers	Brain Hippocampus Middle	brain
16	chr7:139442400-139462000	Weak transcription	HUVEC	blood vessel
17	chr7:139444000-139466000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:139444600-139462600	Weak transcription	NHEK	skin
19	chr7:139444800-139454400	Enhancers	Fetal Thymus	thymus
20	chr7:139445600-139453600	Weak transcription	Small Intestine	intestine
21	chr7:139445800-139460600	Weak transcription	HMEC	breast
22	chr7:139445800-139466000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:139446600-139453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:139446600-139459000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:139446600-139475800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:139446600-139476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:139446800-139454200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:139446800-139476400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:139447400-139453400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:139448400-139465400	Weak transcription	Primary B cells from cord blood	blood
31	chr7:139448600-139453800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr7:139448600-139461200	Weak transcription	Aorta	Aorta
33	chr7:139449200-139454800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:139449200-139455400	Weak transcription	GM12878-XiMat	blood
35	chr7:139449200-139466600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr7:139449800-139453600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:139450200-139454600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:139450600-139453600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:139450600-139453600	Weak transcription	Brain Germinal Matrix	brain
40	chr7:139450600-139454200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:139450600-139455600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:139451200-139455000	Enhancers	Fetal Heart	heart
43	chr7:139451400-139453400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr7:139451400-139466000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr7:139451600-139454600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:139451800-139454200	Enhancers	HSMMtube	muscle
47	chr7:139451800-139455000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:139451800-139456800	Enhancers	Brain Cingulate Gyrus	brain
49	chr7:139451800-139458000	Enhancers	Liver	Liver
50	chr7:139451800-139458200	Weak transcription	H1 Cell Line	embryonic stem cell

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