Variant report

Variant	rs10281938
Chromosome Location	chr7:87676094-87676095
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10226525	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10228023	1.00[AFR][1000 genomes]
rs10240974	1.00[AFR][1000 genomes]
rs10241480	1.00[AFR][1000 genomes]
rs10250221	1.00[AFR][1000 genomes]
rs10253889	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10260540	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10270191	0.86[AFR][1000 genomes]
rs10270293	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10275870	1.00[YRI][hapmap]
rs28421154	1.00[AFR][1000 genomes]
rs28602457	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87675200-87676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:87675200-87676400	Enhancers	Brain Anterior Caudate	brain
3	chr7:87675200-87676800	Enhancers	Fetal Heart	heart
4	chr7:87675400-87676200	Weak transcription	Right Ventricle	heart
5	chr7:87675400-87676400	Enhancers	Fetal Intestine Large	intestine
6	chr7:87675400-87676400	Weak transcription	Fetal Intestine Small	intestine
7	chr7:87675400-87676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:87675600-87676400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:87675600-87676800	Enhancers	Brain Hippocampus Middle	brain
10	chr7:87675600-87676800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr7:87675800-87676200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr7:87675800-87676400	Enhancers	GM12878-XiMat	blood
13	chr7:87675800-87676600	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:87675800-87676600	Enhancers	Small Intestine	intestine
15	chr7:87675800-87676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:87676000-87676200	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr7:87676000-87685800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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