Variant report

Variant	rs10282243
Chromosome Location	chr7:99011463-99011464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99010009..99013201-chr7:99032916..99037248,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17161680	1.00[EUR][1000 genomes]
rs45486099	0.84[AFR][1000 genomes]
rs61538655	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99007200-99035400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99007600-99015000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:99007800-99012000	Strong transcription	Placenta Amnion	Placenta Amnion
4	chr7:99007800-99024000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:99008000-99011600	Strong transcription	Right Ventricle	heart
6	chr7:99008000-99018400	Strong transcription	Gastric	stomach
7	chr7:99008000-99018400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr7:99008000-99019800	Weak transcription	Right Atrium	heart
9	chr7:99008000-99023400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:99008000-99023600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:99008000-99023800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr7:99008000-99023800	Strong transcription	Placenta	Placenta
13	chr7:99008000-99024000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:99008000-99024000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:99008000-99024000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:99008000-99024000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:99008000-99024000	Strong transcription	Spleen	Spleen
18	chr7:99008000-99024200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:99008000-99024200	Strong transcription	Fetal Stomach	stomach
20	chr7:99008000-99026600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:99008200-99012400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:99008200-99023400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:99008200-99023600	Strong transcription	Fetal Intestine Large	intestine
24	chr7:99008200-99023800	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:99008200-99023800	Strong transcription	Fetal Brain Female	brain
26	chr7:99008200-99023800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr7:99008200-99023800	Strong transcription	Fetal Muscle Leg	muscle
28	chr7:99008200-99024000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:99008200-99024000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:99008200-99024000	Strong transcription	Lung	lung
31	chr7:99008200-99024200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:99008400-99012800	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:99008400-99013000	Strong transcription	Primary hematopoietic stem cells	blood
34	chr7:99008400-99015000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:99008400-99015600	Strong transcription	Fetal Kidney	kidney
36	chr7:99008400-99015800	Strong transcription	Primary B cells from cord blood	blood
37	chr7:99008400-99016800	Strong transcription	Thymus	Thymus
38	chr7:99008400-99018800	Strong transcription	Fetal Lung	lung
39	chr7:99008400-99018800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr7:99008400-99019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:99008400-99019000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:99008400-99019000	Strong transcription	Stomach Smooth Muscle	stomach
43	chr7:99008400-99019200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:99008400-99019400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr7:99008400-99023200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:99008400-99023400	Strong transcription	Fetal Thymus	thymus
47	chr7:99008400-99023600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:99008400-99023600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:99008400-99023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:99008400-99023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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