Variant report

Variant	rs10282901
Chromosome Location	chr8:69549685-69549686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10099116	1.00[ASW][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs10110199	1.00[AMR][1000 genomes]
rs12334859	1.00[AMR][1000 genomes]
rs16934922	1.00[ASW][hapmap]
rs28515109	1.00[AMR][1000 genomes]
rs73265889	1.00[AMR][1000 genomes]
rs73276553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890984	chr8:69482825-69556111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69538000-69550400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
3	chr8:69548800-69552200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:69549200-69549800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:69549600-69550400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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