Variant report

Variant	rs10283052
Chromosome Location	chr8:10057263-10057264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10088463	1.00[AFR][1000 genomes]
rs10092068	1.00[YRI][hapmap]
rs10105177	1.00[YRI][hapmap]
rs12547440	1.00[YRI][hapmap]
rs12681932	1.00[YRI][hapmap]
rs13439670	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28507571	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10050000-10057800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:10050000-10068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:10050400-10058000	Weak transcription	Aorta	Aorta
4	chr8:10051600-10058400	Enhancers	Fetal Brain Male	brain
5	chr8:10052400-10058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:10053600-10062400	Weak transcription	Pancreas	Pancrea
7	chr8:10053600-10065000	Weak transcription	Brain Germinal Matrix	brain
8	chr8:10053800-10062400	Weak transcription	Liver	Liver
9	chr8:10053800-10087000	Weak transcription	Spleen	Spleen
10	chr8:10054000-10059200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:10054000-10064200	Weak transcription	Brain Angular Gyrus	brain
12	chr8:10054800-10057400	Enhancers	Brain Substantia Nigra	brain
13	chr8:10055200-10063800	Weak transcription	Fetal Brain Female	brain
14	chr8:10055400-10074600	Weak transcription	Left Ventricle	heart
15	chr8:10055400-10078400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:10055600-10086200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:10056600-10058000	Weak transcription	HSMMtube	muscle
18	chr8:10056600-10064800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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