Variant report

Variant	rs1028467
Chromosome Location	chr6:140263914-140263915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140257717..140262130-chr6:140263178..140266087,5	K562	blood:
2	chr6:139867821..139870719-chr6:140261464..140264048,2	K562	blood:
3	chr6:139866369..139869321-chr6:140262548..140264111,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12197784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202967	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1338692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547749	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1977739	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211064	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328001	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4416686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4604289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570387	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751424	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9495615	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9495620	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140259200-140265600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:140261000-140265400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:140261200-140264200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:140261800-140264000	Enhancers	HSMM	muscle
5	chr6:140261800-140265600	Enhancers	Osteobl	bone
6	chr6:140262000-140264200	Enhancers	Placenta	Placenta
7	chr6:140262000-140265600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140262000-140265800	Enhancers	NHDF-Ad	bronchial
9	chr6:140262200-140264000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:140262200-140264200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:140262400-140264000	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:140262600-140264600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:140262600-140265400	Enhancers	Adipose Nuclei	Adipose
14	chr6:140262600-140265800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:140262800-140264000	Weak transcription	NH-A	brain
16	chr6:140262800-140264200	Weak transcription	Fetal Intestine Small	intestine
17	chr6:140262800-140266200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:140262800-140266600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:140263000-140265200	Enhancers	Fetal Lung	lung
20	chr6:140263200-140264200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:140263200-140264400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:140263200-140264400	Enhancers	K562	blood
23	chr6:140263200-140265600	Enhancers	NHLF	lung
24	chr6:140263400-140265600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:140263400-140265600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:140263400-140265800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:140263600-140264000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:140263600-140264000	Flanking Active TSS	HSMMtube	muscle
29	chr6:140263600-140264200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:140263600-140264200	Enhancers	Fetal Muscle Leg	muscle
31	chr6:140263600-140264600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:140263600-140264800	Enhancers	Fetal Heart	heart
33	chr6:140263600-140264800	Enhancers	Fetal Stomach	stomach
34	chr6:140263600-140265400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:140263600-140265600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:140263600-140265600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:140263600-140265600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr6:140263600-140265600	Enhancers	Fetal Kidney	kidney
39	chr6:140263600-140265600	Enhancers	Hela-S3	cervix
40	chr6:140263800-140264000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:140263800-140264200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr6:140263800-140264200	Enhancers	Right Atrium	heart
43	chr6:140263800-140264200	Enhancers	Right Ventricle	heart
44	chr6:140263800-140264400	Genic enhancers	Aorta	Aorta
45	chr6:140263800-140264400	Enhancers	Ovary	ovary
46	chr6:140263800-140264600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:140263800-140264800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:140263800-140265000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:140263800-140265200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:140263800-140265200	Enhancers	Rectal Smooth Muscle	rectum

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