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Variant report
Variant
rs1028474
Chromosome Location
chrX:103838055-103838056
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chrX:103836253..103838976-chrX:103840662..103843045,2
K562
blood:
No data
No data
No data
No data
Extended variants information (count: 8 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs5962437
1.00[YRI][hapmap]
rs5962956
1.00[YRI][hapmap]
rs5962960
1.00[YRI][hapmap]
rs5962965
0.90[YRI][hapmap]
rs6523783
0.90[YRI][hapmap]
rs7059845
1.00[YRI][hapmap]
rs7064742
0.90[YRI][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv916408
chrX:103552340-104347979
Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNA
6 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links