Variant report

Variant	rs1028794
Chromosome Location	chr13:75980741-75980742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1105686	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75973400-75987200	Weak transcription	Gastric	stomach
2	chr13:75975200-75981000	Weak transcription	Pancreas	Pancrea
3	chr13:75976200-75982000	Enhancers	Fetal Heart	heart
4	chr13:75976600-75980800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:75976600-75981000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:75977200-75984400	Weak transcription	Lung	lung
7	chr13:75977400-75984200	Weak transcription	Left Ventricle	heart
8	chr13:75977400-75984200	Weak transcription	GM12878-XiMat	blood
9	chr13:75977400-75990600	Weak transcription	Brain Anterior Caudate	brain
10	chr13:75978000-75982000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr13:75978000-75982400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr13:75978400-75981200	Enhancers	Fetal Kidney	kidney
13	chr13:75978400-75981800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr13:75979000-75981000	Enhancers	Fetal Muscle Leg	muscle
15	chr13:75979600-75981000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:75979800-75980800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:75979800-75980800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:75979800-75981400	Enhancers	Adipose Nuclei	Adipose
19	chr13:75979800-75989400	Weak transcription	HSMM	muscle
20	chr13:75980000-75980800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:75980000-75980800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:75980000-75980800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr13:75980000-75980800	Enhancers	Fetal Lung	lung
24	chr13:75980000-75981200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr13:75980000-75981200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr13:75980000-75981200	Enhancers	NHDF-Ad	bronchial
27	chr13:75980000-75981200	Enhancers	Osteobl	bone
28	chr13:75980000-75981400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr13:75980200-75980800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr13:75980200-75980800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:75980200-75980800	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr13:75980200-75980800	Active TSS	Ovary	ovary
33	chr13:75980200-75981400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr13:75980200-75982000	Enhancers	HepG2	liver
35	chr13:75980600-75980800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr13:75980600-75981200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:75980600-75981400	Enhancers	Right Atrium	heart
38	chr13:75980600-75982000	Enhancers	Psoas Muscle	Psoas

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