Variant report

Variant	rs1029153
Chromosome Location	chr10:44867146-44867147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44856118..44857833-chr10:44865837..44868542,2	K562	blood:
2	chr10:44864860..44867603-chr10:44877581..44881069,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1065297	0.95[LWK][hapmap];0.90[YRI][hapmap]
rs10900031	0.86[YRI][hapmap]
rs11239019	0.80[YRI][hapmap]
rs12258838	0.80[YRI][hapmap]
rs12413068	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1804429	0.80[YRI][hapmap]
rs1804430	0.80[YRI][hapmap]
rs2236533	0.83[JPT][hapmap];0.88[MEX][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2236534	0.83[JPT][hapmap]
rs2297630	0.83[JPT][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2522	0.80[YRI][hapmap]
rs2839696	0.80[YRI][hapmap]
rs3740085	0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs754617	0.83[JPT][hapmap]
rs754618	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv825357	chr10:44866647-44867272	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1029153	ALOX5	cis	parietal	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
2	chr10:44848400-44867400	Weak transcription	Adipose Nuclei	Adipose
3	chr10:44848400-44867600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:44849400-44869000	Weak transcription	Right Ventricle	heart
5	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:44854200-44867200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:44854400-44869000	Weak transcription	Brain Substantia Nigra	brain
8	chr10:44859000-44871800	Weak transcription	Psoas Muscle	Psoas
9	chr10:44860000-44879000	Weak transcription	Gastric	stomach
10	chr10:44860200-44868800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:44861400-44869200	Weak transcription	Colonic Mucosa	Colon
12	chr10:44863000-44867400	Weak transcription	Pancreas	Pancrea
13	chr10:44863200-44869400	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:44864600-44868000	Weak transcription	NHLF	lung
15	chr10:44864600-44871600	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:44864600-44876200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:44864600-44876800	Strong transcription	Fetal Stomach	stomach
18	chr10:44864800-44877800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:44865000-44867400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:44865000-44873000	Weak transcription	Esophagus	oesophagus
21	chr10:44865200-44868600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr10:44865400-44867400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:44865400-44867400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:44865400-44867400	Weak transcription	Aorta	Aorta
25	chr10:44865400-44867400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:44865400-44867800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:44865400-44876200	Weak transcription	Right Atrium	heart
28	chr10:44865600-44868000	Weak transcription	Fetal Kidney	kidney
29	chr10:44865600-44878000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:44865800-44867200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:44865800-44872200	Strong transcription	Fetal Intestine Small	intestine
32	chr10:44866000-44876200	Strong transcription	Left Ventricle	heart
33	chr10:44866000-44877600	Weak transcription	Fetal Brain Female	brain
34	chr10:44866200-44867200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:44866200-44867400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:44866200-44867400	Weak transcription	Ovary	ovary
37	chr10:44866200-44876000	Strong transcription	Osteobl	bone
38	chr10:44866400-44867200	Weak transcription	Fetal Lung	lung
39	chr10:44866400-44867200	Weak transcription	NHDF-Ad	bronchial
40	chr10:44866400-44867400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:44866400-44868200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:44866400-44868400	Weak transcription	Fetal Intestine Large	intestine
43	chr10:44866400-44868600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:44866400-44870000	Strong transcription	Fetal Muscle Leg	muscle
45	chr10:44866400-44875600	Weak transcription	Fetal Brain Male	brain
46	chr10:44866400-44878600	Weak transcription	Liver	Liver
47	chr10:44866600-44867800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:44866600-44870600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:44866600-44876200	Weak transcription	Brain Germinal Matrix	brain
50	chr10:44866600-44877600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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